[SciPy-Dev] ANN: SciPy 1.6.0
Tyler Reddy
tyler.je.reddy at gmail.com
Thu Dec 31 10:58:17 EST 2020
Hi all,
On behalf of the SciPy development team I'm pleased to announce
the release of SciPy 1.6.0.
Sources and binary wheels can be found at:
https://pypi.org/project/scipy/
and at:
https://github.com/scipy/scipy/releases/tag/v1.6.0
One of a few ways to install this release with pip:
pip install scipy==1.6.0
=====================
SciPy 1.6.0 Release Notes
=====================
SciPy 1.6.0 is the culmination of 6 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. There have been a number of deprecations and API changes
in this release, which are documented below. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
optimizations. Before upgrading, we recommend that users check that
their own code does not use deprecated SciPy functionality (to do so,
run your code with ``python -Wd`` and check for ``DeprecationWarning`` s).
Our development attention will now shift to bug-fix releases on the
1.6.x branch, and on adding new features on the master branch.
This release requires Python 3.7+ and NumPy 1.16.5 or greater.
For running on PyPy, PyPy3 6.0+ is required.
Highlights of this release
---------------------------------
- `scipy.ndimage` improvements: Fixes and ehancements to boundary
extension
modes for interpolation functions. Support for complex-valued inputs in
many
filtering and interpolation functions. New ``grid_mode`` option for
`scipy.ndimage.zoom` to enable results consistent with scikit-image's
``rescale``.
- `scipy.optimize.linprog` has fast, new methods for large, sparse
problems
from the ``HiGHS`` library.
- `scipy.stats` improvements including new distributions, a new test, and
enhancements to existing distributions and tests
New features
==========
`scipy.special` improvements
---------------------------------------
`scipy.special` now has improved support for 64-bit ``LAPACK`` backend
`scipy.odr` improvements
----------------------------------
`scipy.odr` now has support for 64-bit integer ``BLAS``
`scipy.odr.ODR` has gained an optional ``overwrite`` argument so that
existing
files may be overwritten.
`scipy.integrate` improvements
------------------------------------------
Some renames of functions with poor names were done, with the old names
retained without being in the reference guide for backwards compatibility
reasons:
- ``integrate.simps`` was renamed to ``integrate.simpson``
- ``integrate.trapz`` was renamed to ``integrate.trapezoid``
- ``integrate.cumtrapz`` was renamed to ``integrate.cumulative_trapezoid``
`scipy.cluster` improvements
---------------------------------------
`scipy.cluster.hierarchy.DisjointSet` has been added for incremental
connectivity queries.
`scipy.cluster.hierarchy.dendrogram` return value now also includes leaf
color
information in `leaves_color_list`.
`scipy.interpolate` improvements
--------------------------------------------
`scipy.interpolate.interp1d` has a new method ``nearest-up``, similar to
the
existing method ``nearest`` but rounds half-integers up instead of down.
`scipy.io` improvements
--------------------------------
Support has been added for reading arbitrary bit depth integer PCM WAV
files
from 1- to 32-bit, including the commonly-requested 24-bit depth.
`scipy.linalg` improvements
-------------------------------------
The new function `scipy.linalg.matmul_toeplitz` uses the FFT to compute the
product of a Toeplitz matrix with another matrix.
`scipy.linalg.sqrtm` and `scipy.linalg.logm` have performance improvements
thanks to additional Cython code.
Python ``LAPACK`` wrappers have been added for ``pptrf``, ``pptrs``,
``ppsv``,
``pptri``, and ``ppcon``.
`scipy.linalg.norm` and the ``svd`` family of functions will now use 64-bit
integer backends when available.
`scipy.ndimage` improvements
------------------------------------------
`scipy.ndimage.convolve`, `scipy.ndimage.correlate` and their 1d
counterparts
now accept both complex-valued images and/or complex-valued filter kernels.
All
convolution-based filters also now accept complex-valued inputs
(e.g. ``gaussian_filter``, ``uniform_filter``, etc.).
Multiple fixes and enhancements to boundary handling were introduced to
`scipy.ndimage` interpolation functions (i.e. ``affine_transform``,
``geometric_transform``, ``map_coordinates``, ``rotate``, ``shift``,
``zoom``).
A new boundary mode, ``grid-wrap`` was added which wraps images
periodically,
using a period equal to the shape of the input image grid. This is in
contrast
to the existing ``wrap`` mode which uses a period that is one sample
smaller
than the original signal extent along each dimension.
A long-standing bug in the ``reflect`` boundary condition has been fixed
and
the mode ``grid-mirror`` was introduced as a synonym for ``reflect``.
A new boundary mode, ``grid-constant`` is now available. This is similar to
the existing ndimage ``constant`` mode, but interpolation will still
performed
at coordinate values outside of the original image extent. This
``grid-constant`` mode is consistent with OpenCV's ``BORDER_CONSTANT`` mode
and scikit-image's ``constant`` mode.
Spline pre-filtering (used internally by ``ndimage`` interpolation
functions
when ``order >= 2``), now supports all boundary modes rather than always
defaulting to mirror boundary conditions. The standalone functions
``spline_filter`` and ``spline_filter1d`` have analytical boundary
conditions
that match modes ``mirror``, ``grid-wrap`` and ``reflect``.
`scipy.ndimage` interpolation functions now accept complex-valued inputs. In
this case, the interpolation is applied independently to the real and
imaginary components.
The ``ndimage`` tutorials
(https://docs.scipy.org/doc/scipy/reference/tutorial/ndimage.html) have
been
updated with new figures to better clarify the exact behavior of all of the
interpolation boundary modes.
`scipy.ndimage.zoom` now has a ``grid_mode`` option that changes the
coordinate
of the center of the first pixel along an axis from 0 to 0.5. This allows
resizing in a manner that is consistent with the behavior of scikit-image's
``resize`` and ``rescale`` functions (and OpenCV's ``cv2.resize``).
`scipy.optimize` improvements
-----------------------------------------
`scipy.optimize.linprog` has fast, new methods for large, sparse problems
from
the ``HiGHS`` C++ library. ``method='highs-ds'`` uses a high performance
dual
revised simplex implementation (HSOL), ``method='highs-ipm'`` uses an
interior-point method with crossover, and ``method='highs'`` chooses
between
the two automatically. These methods are typically much faster and often
exceed
the accuracy of other ``linprog`` methods, so we recommend explicitly
specifying one of these three method values when using ``linprog``.
`scipy.optimize.quadratic_assignment` has been added for approximate
solution
of the quadratic assignment problem.
`scipy.optimize.linear_sum_assignment` now has a substantially reduced
overhead
for small cost matrix sizes
`scipy.optimize.least_squares` has improved performance when the user
provides
the jacobian as a sparse jacobian already in ``csr_matrix`` format
`scipy.optimize.linprog` now has an ``rr_method`` argument for specification
of the method used for redundancy handling, and a new method for this
purpose
is available based on the interpolative decomposition approach.
`scipy.signal` improvements
--------------------------------------
`scipy.signal.gammatone` has been added to design FIR or IIR filters that
model the human auditory system.
`scipy.signal.iircomb` has been added to design IIR peaking/notching comb
filters that can boost/attenuate a frequency from a signal.
`scipy.signal.sosfilt` performance has been improved to avoid some
previously-
observed slowdowns
`scipy.signal.windows.taylor` has been added--the Taylor window function is
commonly used in radar digital signal processing
`scipy.signal.gauss_spline` now supports ``list`` type input for consistency
with other related SciPy functions
`scipy.signal.correlation_lags` has been added to allow calculation of the
lag/
displacement indices array for 1D cross-correlation.
`scipy.sparse` improvements
---------------------------------------
A solver for the minimum weight full matching problem for bipartite graphs,
also known as the linear assignment problem, has been added in
`scipy.sparse.csgraph.min_weight_full_bipartite_matching`. In particular,
this
provides functionality analogous to that of
`scipy.optimize.linear_sum_assignment`, but with improved performance for
sparse
inputs, and the ability to handle inputs whose dense representations would
not
fit in memory.
The time complexity of `scipy.sparse.block_diag` has been improved
dramatically
from quadratic to linear.
`scipy.sparse.linalg` improvements
-----------------------------------------------
The vendored version of ``SuperLU`` has been updated
`scipy.fft` improvements
--------------------------------
The vendored ``pocketfft`` library now supports compiling with ARM neon
vector
extensions and has improved thread pool behavior.
`scipy.spatial` improvements
---------------------------------------
The python implementation of ``KDTree`` has been dropped and ``KDTree`` is
now
implemented in terms of ``cKDTree``. You can now expect ``cKDTree``-like
performance by default. This also means ``sys.setrecursionlimit`` no longer
needs to be increased for querying large trees.
``transform.Rotation`` has been updated with support for Modified Rodrigues
Parameters alongside the existing rotation representations (PR gh-12667).
`scipy.spatial.transform.Rotation` has been partially cythonized, with some
performance improvements observed
`scipy.spatial.distance.cdist` has improved performance with the
``minkowski``
metric, especially for p-norm values of 1 or 2.
`scipy.stats` improvements
------------------------------------
New distributions have been added to `scipy.stats`:
- The asymmetric Laplace continuous distribution has been added as
`scipy.stats.laplace_asymmetric`.
- The negative hypergeometric distribution has been added as
`scipy.stats.nhypergeom`.
- The multivariate t distribution has been added as
`scipy.stats.multivariate_t`.
- The multivariate hypergeometric distribution has been added as
`scipy.stats.multivariate_hypergeom`.
The ``fit`` method has been overridden for several distributions
(``laplace``,
``pareto``, ``rayleigh``, ``invgauss``, ``logistic``, ``gumbel_l``,
``gumbel_r``); they now use analytical, distribution-specific maximum
likelihood estimation results for greater speed and accuracy than the
generic
(numerical optimization) implementation.
The one-sample Cramér-von Mises test has been added as
`scipy.stats.cramervonmises`.
An option to compute one-sided p-values was added to
`scipy.stats.ttest_1samp`,
`scipy.stats.ttest_ind_from_stats`, `scipy.stats.ttest_ind` and
`scipy.stats.ttest_rel`.
The function `scipy.stats.kendalltau` now has an option to compute
Kendall's
tau-c (also known as Stuart's tau-c), and support has been added for exact
p-value calculations for sample sizes ``> 171``.
`stats.trapz` was renamed to `stats.trapezoid`, with the former name
retained
as an alias for backwards compatibility reasons.
The function `scipy.stats.linregress` now includes the standard error of
the
intercept in its return value.
The ``_logpdf``, ``_sf``, and ``_isf`` methods have been added to
`scipy.stats.nakagami`; ``_sf`` and ``_isf`` methods also added to
`scipy.stats.gumbel_r`
The ``sf`` method has been added to `scipy.stats.levy` and
`scipy.stats.levy_l`
for improved precision.
`scipy.stats.binned_statistic_dd` performance improvements for the following
computed statistics: ``max``, ``min``, ``median``, and ``std``.
We gratefully acknowledge the Chan-Zuckerberg Initiative Essential Open
Source
Software for Science program for supporting many of these improvements to
`scipy.stats`.
Deprecated features
================
`scipy.spatial` changes
-------------------------------
Calling ``KDTree.query`` with ``k=None`` to find all neighbours is
deprecated.
Use ``KDTree.query_ball_point`` instead.
``distance.wminkowski`` was deprecated; use ``distance.minkowski`` and
supply
weights with the ``w`` keyword instead.
Backwards incompatible changes
==========================
`scipy` changes
---------------------
Using `scipy.fft` as a function aliasing ``numpy.fft.fft`` was removed
after
being deprecated in SciPy ``1.4.0``. As a result, the `scipy.fft` submodule
must be explicitly imported now, in line with other SciPy subpackages.
`scipy.signal` changes
-------------------------------
The output of ``decimate``, ``lfilter_zi``, ``lfiltic``, ``sos2tf``, and
``sosfilt_zi`` have been changed to match ``numpy.result_type`` of their
inputs.
The window function ``slepian`` was removed. It had been deprecated since
SciPy
``1.1``.
`scipy.spatial` changes
-------------------------------
``cKDTree.query`` now returns 64-bit rather than 32-bit integers on Windows,
making behaviour consistent between platforms (PR gh-12673).
`scipy.stats` changes
-----------------------------
The ``frechet_l`` and ``frechet_r`` distributions were removed. They were
deprecated since SciPy ``1.0``.
Other changes
=============
``setup_requires`` was removed from ``setup.py``. This means that users
invoking ``python setup.py install`` without having numpy already installed
will now get an error, rather than having numpy installed for them via
``easy_install``. This install method was always fragile and problematic,
users
are encouraged to use ``pip`` when installing from source.
- Fixed a bug in `scipy.optimize.dual_annealing` ``accept_reject``
calculation
that caused uphill jumps to be accepted less frequently.
- The time required for (un)pickling of `scipy.stats.rv_continuous`,
`scipy.stats.rv_discrete`, and `scipy.stats.rv_frozen` has been
significantly
reduced (gh12550). Inheriting subclasses should note that
``__setstate__`` no
longer calls ``__init__`` upon unpickling.
Authors
=======
* @endolith
* @vkk800
* aditya +
* George Bateman +
* Christoph Baumgarten
* Peter Bell
* Tobias Biester +
* Keaton J. Burns +
* Evgeni Burovski
* Rüdiger Busche +
* Matthias Bussonnier
* Dominic C +
* Corallus Caninus +
* CJ Carey
* Thomas A Caswell
* chapochn +
* Lucía Cheung
* Zach Colbert +
* Coloquinte +
* Yannick Copin +
* Devin Crowley +
* Terry Davis +
* Michaël Defferrard +
* devonwp +
* Didier +
* divenex +
* Thomas Duvernay +
* Eoghan O'Connell +
* Gökçen Eraslan
* Kristian Eschenburg +
* Ralf Gommers
* Thomas Grainger +
* GreatV +
* Gregory Gundersen +
* h-vetinari +
* Matt Haberland
* Mark Harfouche +
* He He +
* Alex Henrie
* Chun-Ming Huang +
* Martin James McHugh III +
* Alex Izvorski +
* Joey +
* ST John +
* Jonas Jonker +
* Julius Bier Kirkegaard
* Marcin Konowalczyk +
* Konrad0
* Sam Van Kooten +
* Sergey Koposov +
* Peter Mahler Larsen
* Eric Larson
* Antony Lee
* Gregory R. Lee
* Loïc Estève
* Jean-Luc Margot +
* MarkusKoebis +
* Nikolay Mayorov
* G. D. McBain
* Andrew McCluskey +
* Nicholas McKibben
* Sturla Molden
* Denali Molitor +
* Eric Moore
* Shashaank N +
* Prashanth Nadukandi +
* nbelakovski +
* Andrew Nelson
* Nick +
* Nikola Forró +
* odidev
* ofirr +
* Sambit Panda
* Dima Pasechnik
* Tirth Patel +
* Matti Picus
* Paweł Redzyński +
* Vladimir Philipenko +
* Philipp Thölke +
* Ilhan Polat
* Eugene Prilepin +
* Vladyslav Rachek
* Ram Rachum +
* Tyler Reddy
* Martin Reinecke +
* Simon Segerblom Rex +
* Lucas Roberts
* Benjamin Rowell +
* Eli Rykoff +
* Atsushi Sakai
* Moritz Schulte +
* Daniel B. Smith
* Steve Smith +
* Jan Soedingrekso +
* Victor Stinner +
* Jose Storopoli +
* Diana Sukhoverkhova +
* Søren Fuglede Jørgensen
* taoky +
* Mike Taves +
* Ian Thomas +
* Will Tirone +
* Frank Torres +
* Seth Troisi
* Ronald van Elburg +
* Hugo van Kemenade
* Paul van Mulbregt
* Saul Ivan Rivas Vega +
* Pauli Virtanen
* Jan Vleeshouwers
* Samuel Wallan
* Warren Weckesser
* Ben West +
* Eric Wieser
* WillTirone +
* Levi John Wolf +
* Zhiqing Xiao
* Rory Yorke +
* Yun Wang (Maigo) +
* Egor Zemlyanoy +
* ZhihuiChen0903 +
* Jacob Zhong +
A total of 122 people contributed to this release.
People with a "+" by their names contributed a patch for the first time.
This list of names is automatically generated, and may not be fully
complete.
Issues closed for 1.6.0
-------------------------------
* `#1323 <https://github.com/scipy/scipy/issues/1323>`__: ndimage.shift
destroys data from edges (Trac #796)
* `#1892 <https://github.com/scipy/scipy/issues/1892>`__: using rptfile=
with an existing file causes a Fortran runtime...
* `#1903 <https://github.com/scipy/scipy/issues/1903>`__: ndimage.rotate
misses some values (Trac #1378)
* `#1930 <https://github.com/scipy/scipy/issues/1930>`__: scipy.io.wavfile
should be able to read 24 bit signed wave (Trac...
* `#3158 <https://github.com/scipy/scipy/issues/3158>`__: Odd casting
behaviour of signal.filtfilt
* `#3203 <https://github.com/scipy/scipy/issues/3203>`__:
interpolation.zoom incorrect output for certain cases
* `#3645 <https://github.com/scipy/scipy/issues/3645>`__: BUG: stats:
mstats.pearsonr calculation is wrong if the masks...
* `#3665 <https://github.com/scipy/scipy/issues/3665>`__: Return Bunch
objects from stats functions
* `#4922 <https://github.com/scipy/scipy/issues/4922>`__: unexpected zero
output values from zoom
* `#5202 <https://github.com/scipy/scipy/issues/5202>`__: BUG: stats:
Spurious warnings from the pdf method of several...
* `#5223 <https://github.com/scipy/scipy/issues/5223>`__: Zoom does not
return the same values when resizing a sub-array...
* `#5396 <https://github.com/scipy/scipy/issues/5396>`__:
scipy.spatial.distance.pdist documention bug
* `#5489 <https://github.com/scipy/scipy/issues/5489>`__: ValueError:
failed to create intent(cache|hide)|optional array--...
* `#6096 <https://github.com/scipy/scipy/issues/6096>`__: loadmat drops
dtype of empty arrays when squeeze_me=True
* `#6713 <https://github.com/scipy/scipy/issues/6713>`__:
sicpy.ndimage.zoom returns artefacts and boundaries in some cases
* `#7125 <https://github.com/scipy/scipy/issues/7125>`__: Impossible to
know number of dimensions in c function used by...
* `#7324 <https://github.com/scipy/scipy/issues/7324>`__:
scipy.ndimage.zoom bad interpolation when downsampling (zoom...
* `#8131 <https://github.com/scipy/scipy/issues/8131>`__: BUG:
geometric_transform wrap mode possible bug
* `#8163 <https://github.com/scipy/scipy/issues/8163>`__: LSMR fails on
some random values when providing an x0
* `#8210 <https://github.com/scipy/scipy/issues/8210>`__: Why should I
choose order > 1 for scipy.ndimage.zoom?
* `#8465 <https://github.com/scipy/scipy/issues/8465>`__: Unexpected
behavior with reflect mode of ndimage.rotate
* `#8776 <https://github.com/scipy/scipy/issues/8776>`__: cdist behavior
with Minkowsky and np.inf
* `#9168 <https://github.com/scipy/scipy/issues/9168>`__: documentation of
pearson3 in scipy.stats unclear
* `#9223 <https://github.com/scipy/scipy/issues/9223>`__: Faster
implementation of scipy.sparse.block_diag
* `#9476 <https://github.com/scipy/scipy/issues/9476>`__: Invalid index in
signal.medfilt2d's QUICK_SELECT
* `#9857 <https://github.com/scipy/scipy/issues/9857>`__:
scipy.odr.Output.sd_beta is not standard error
* `#9865 <https://github.com/scipy/scipy/issues/9865>`__: Strange behavior
of \`ndimage.shift\` and \`ndimage.affine_transform\`
* `#10042 <https://github.com/scipy/scipy/issues/10042>`__: Consider
support for multivariate student-t distribution?
* `#10134 <https://github.com/scipy/scipy/issues/10134>`__: gausshyper
distribution accepts invalid parameters
* `#10179 <https://github.com/scipy/scipy/issues/10179>`__: str+bytes
concatenation error in test_lapack.py
* `#10216 <https://github.com/scipy/scipy/issues/10216>`__:
cKDTree.query_ball_point speed regression
* `#10463 <https://github.com/scipy/scipy/issues/10463>`__: ENH: vectorize
scipy.fft for more CPU architectures
* `#10593 <https://github.com/scipy/scipy/issues/10593>`__: Rename \`sum\`
ndimage function
* `#10595 <https://github.com/scipy/scipy/issues/10595>`__:
scipy.stats.ttest_1samp should support alternative hypothesis
* `#10610 <https://github.com/scipy/scipy/issues/10610>`__:
ndimage.interpolation.spline_filter1d default value of mode
* `#10620 <https://github.com/scipy/scipy/issues/10620>`__:
ndimage.interpolation.zoom() option to work like skimage.transform.resize()
* `#10711 <https://github.com/scipy/scipy/issues/10711>`__: Array Shapes
Not Aligned Bug in scipy.optimize._lsq.lsq_linear.py
* `#10782 <https://github.com/scipy/scipy/issues/10782>`__: BUG: optimize:
methods unknown to \`scipy.optimize.show_options\`
* `#10892 <https://github.com/scipy/scipy/issues/10892>`__: Possible typo
in an equation of optimize/dual_annealing
* `#11020 <https://github.com/scipy/scipy/issues/11020>`__:
signal.fftconvolve return a tuple including lag information
* `#11093 <https://github.com/scipy/scipy/issues/11093>`__:
scipy.interpolate.interp1d can not handle datetime64
* `#11170 <https://github.com/scipy/scipy/issues/11170>`__: Use
manylinux2014 to get aarch64/ppc64le support
* `#11186 <https://github.com/scipy/scipy/issues/11186>`__: BUG: stats:
pearson3 CDF and SF functions incorrect when skew...
* `#11366 <https://github.com/scipy/scipy/issues/11366>`__:
DeprecationWarning due to invalid escape sequences
* `#11403 <https://github.com/scipy/scipy/issues/11403>`__: Optimize raises
"ValueError: \`x0\` violates bound constraints"...
* `#11558 <https://github.com/scipy/scipy/issues/11558>`__: ENH: IIR comb
filter
* `#11559 <https://github.com/scipy/scipy/issues/11559>`__: BUG: iirdesign
doesn't fail for frequencies above Nyquist
* `#11567 <https://github.com/scipy/scipy/issues/11567>`__:
scipy.signal.iirdesign doesn't check consistency of wp and ws...
* `#11654 <https://github.com/scipy/scipy/issues/11654>`__: ENH: Add
Negative Hypergeometric Distribution
* `#11720 <https://github.com/scipy/scipy/issues/11720>`__: BUG: stats:
wrong shape from median_absolute_deviation for arrays...
* `#11746 <https://github.com/scipy/scipy/issues/11746>`__: BUG: stats:
pearson3 returns size 1 arrays where other distributions...
* `#11756 <https://github.com/scipy/scipy/issues/11756>`__: Improve and fix
\*Spline docstrings and code
* `#11758 <https://github.com/scipy/scipy/issues/11758>`__: BUG: of
scipy.interpolate.CubicSpline when \`bc_type' is set...
* `#11925 <https://github.com/scipy/scipy/issues/11925>`__: MAINT: remove
character encoding check in CI?
* `#11963 <https://github.com/scipy/scipy/issues/11963>`__: Test failures -
TestLinprogIPSparseCholmod
* `#12102 <https://github.com/scipy/scipy/issues/12102>`__: incorrect first
moment of non central t-distribution
* `#12113 <https://github.com/scipy/scipy/issues/12113>`__:
scipy.stats.poisson docs for rate = 0
* `#12152 <https://github.com/scipy/scipy/issues/12152>`__: ENH:
signal.gauss_spline should accept a list
* `#12157 <https://github.com/scipy/scipy/issues/12157>`__: BUG: Iteration
index initialisation is wrong in
scipy.optimize.linesearch.scalar_search_wolfe2
* `#12162 <https://github.com/scipy/scipy/issues/12162>`__: Storing
Rotation object in NumPy array returns an array with...
* `#12176 <https://github.com/scipy/scipy/issues/12176>`__: cannot modify
the slice of an array returned by \`wavfile.read\`
* `#12190 <https://github.com/scipy/scipy/issues/12190>`__: retrieve leave
colors from dendrogram
* `#12196 <https://github.com/scipy/scipy/issues/12196>`__: PERF:
scipy.linalg.pinv is very slow compared to numpy.linalg.pinv
* `#12222 <https://github.com/scipy/scipy/issues/12222>`__: Interpolating
categorical data (interp1d)
* `#12231 <https://github.com/scipy/scipy/issues/12231>`__: Is the p-value
of the Kruskal-Wallis test two-sided?
* `#12249 <https://github.com/scipy/scipy/issues/12249>`__: ENH:
least_squares: should not re-instanciate csr_matrix if already...
* `#12264 <https://github.com/scipy/scipy/issues/12264>`__: DOC: optimize:
linprog method-specific function signature
* `#12290 <https://github.com/scipy/scipy/issues/12290>`__: DOC: Convex
Hull areas are actually perimeters for 2-dimensional...
* `#12308 <https://github.com/scipy/scipy/issues/12308>`__:
integrate.solve_ivp with DOP853 method fails when yDot = 0
* `#12326 <https://github.com/scipy/scipy/issues/12326>`__: BUG:
stats.exponnorm.pdf returns 0 for small K
* `#12337 <https://github.com/scipy/scipy/issues/12337>`__:
scipy.sparse.linalg.eigsh documentation is misleading
* `#12339 <https://github.com/scipy/scipy/issues/12339>`__:
scipy.io.wavfile.write documentation has wrong example
* `#12340 <https://github.com/scipy/scipy/issues/12340>`__:
sparse.lil_matrix.tocsr() fails silently on matrices with nzn...
* `#12350 <https://github.com/scipy/scipy/issues/12350>`__: Create a
2-parameter version of the gamma distribution
* `#12369 <https://github.com/scipy/scipy/issues/12369>`__:
scipy.signal.correlate has an error in the documentation, examples...
* `#12373 <https://github.com/scipy/scipy/issues/12373>`__: interp1d
returns incorrect values for step functions
* `#12378 <https://github.com/scipy/scipy/issues/12378>`__:
interpolate.NearestNDInterpolator.__call__ &
LinearNDInterpolator.__call__...
* `#12411 <https://github.com/scipy/scipy/issues/12411>`__:
scipy.stats.spearmanr mishandles nan variables with "propogate"
* `#12413 <https://github.com/scipy/scipy/issues/12413>`__: DOC: Remove the
"Basic functions" section from the SciPy tutorial.
* `#12415 <https://github.com/scipy/scipy/issues/12415>`__:
scipy.stats.dirichlet documentation issue
* `#12419 <https://github.com/scipy/scipy/issues/12419>`__: least_squares
ValueError with 'lm' method - regression from 1.4.1...
* `#12431 <https://github.com/scipy/scipy/issues/12431>`__: Request for
Python wrapper for LAPACK's ?pptrf (Cholesky factorization...
* `#12458 <https://github.com/scipy/scipy/issues/12458>`__: spearmanr with
entire NaN columns produces errors
* `#12477 <https://github.com/scipy/scipy/issues/12477>`__: WIP: Addition
of MLE for stats.invgauss/wald
* `#12483 <https://github.com/scipy/scipy/issues/12483>`__: reading .wav
fails when the file is too big on python 3.6.0
* `#12490 <https://github.com/scipy/scipy/issues/12490>`__: BUG: stats:
logistic and genlogistic logpdf overflow for large...
* `#12499 <https://github.com/scipy/scipy/issues/12499>`__:
LinearNDInterpolator raises ValueError when value array has
writeable=False...
* `#12523 <https://github.com/scipy/scipy/issues/12523>`__: Wrong key in
__odrpack.c
* `#12547 <https://github.com/scipy/scipy/issues/12547>`__: typo in
scipy/cluster/_hierarchy.pyx
* `#12549 <https://github.com/scipy/scipy/issues/12549>`__: DOC:
least_squares return type is poorly formatted.
* `#12578 <https://github.com/scipy/scipy/issues/12578>`__: TST:
test_bounds_infeasible_2 failing on wheels repo cron jobs
* `#12585 <https://github.com/scipy/scipy/issues/12585>`__: ENH: Add
Multivariate Hypergeometric Distribution
* `#12604 <https://github.com/scipy/scipy/issues/12604>`__: unintuitive
conversion in \`scipy.constants.lambda2nu\`
* `#12606 <https://github.com/scipy/scipy/issues/12606>`__: DOC: Invalid
syntax in example.
* `#12665 <https://github.com/scipy/scipy/issues/12665>`__: List of
possible bugs found by automated code analysis
* `#12696 <https://github.com/scipy/scipy/issues/12696>`__:
scipy.optimize.fminbound, numpy depreciation warning Creating...
* `#12699 <https://github.com/scipy/scipy/issues/12699>`__:
TestProjections.test_iterative_refinements_dense failure
* `#12701 <https://github.com/scipy/scipy/issues/12701>`__:
TestDifferentialEvolutionSolver::test_L4 failing
* `#12719 <https://github.com/scipy/scipy/issues/12719>`__: Misleading
scipy.signal.get_window() docstring with 'exponential'...
* `#12740 <https://github.com/scipy/scipy/issues/12740>`__: circstd doesn't
handle R = hypot(S, C) > 1
* `#12749 <https://github.com/scipy/scipy/issues/12749>`__: ENH: interp1d
Matlab compatibility
* `#12773 <https://github.com/scipy/scipy/issues/12773>`__: Meta-issue:
ndimage spline boundary handling (NumFOCUS proposal)
* `#12813 <https://github.com/scipy/scipy/issues/12813>`__:
optimize.root(method="krylov") fails if options["tol_norm"] expects...
* `#12815 <https://github.com/scipy/scipy/issues/12815>`__: stats.zscore
inconsistent behavior when all values are the same
* `#12840 <https://github.com/scipy/scipy/issues/12840>`__:
scipy.signal.windows.dpss docstring typo
* `#12874 <https://github.com/scipy/scipy/issues/12874>`__: Rotation.random
vs stats.special_ortho_group
* `#12881 <https://github.com/scipy/scipy/issues/12881>`__: FFT -
documentation - examples - linspace construction
* `#12904 <https://github.com/scipy/scipy/issues/12904>`__: BUG: parsing in
loadarff()
* `#12917 <https://github.com/scipy/scipy/issues/12917>`__: GitHub Actions
nightly build triggered on forks
* `#12919 <https://github.com/scipy/scipy/issues/12919>`__: BUG: numerical
precision, use gammaln in nct.mean
* `#12924 <https://github.com/scipy/scipy/issues/12924>`__: Rename Sample
Based Integration Methods to Comply with Code of...
* `#12940 <https://github.com/scipy/scipy/issues/12940>`__: Should the
minimum numpy for AIX be bumped to 1.16.5
* `#12951 <https://github.com/scipy/scipy/issues/12951>`__: A possible typo
in scipy.stats.weightedtau
* `#12952 <https://github.com/scipy/scipy/issues/12952>`__: [Documentation
question] Would it be more precise to specify...
* `#12970 <https://github.com/scipy/scipy/issues/12970>`__: Documentation
presents second order sections as the correct choice...
* `#12982 <https://github.com/scipy/scipy/issues/12982>`__: Calculate
standard error of the intercept in linregress
* `#12985 <https://github.com/scipy/scipy/issues/12985>`__: Possible wrong
link in scipy.stats.wilcoxon doc
* `#12991 <https://github.com/scipy/scipy/issues/12991>`__: least_squares
broken with float32
* `#13001 <https://github.com/scipy/scipy/issues/13001>`__:
\`OptimizeResult.message\` from \`L-BFGS-B\` is a bytes, not...
* `#13030 <https://github.com/scipy/scipy/issues/13030>`__: BUG:
lint_diff.py still fails for backport PRs
* `#13077 <https://github.com/scipy/scipy/issues/13077>`__: CI: codecov
proper patch diffs
* `#13085 <https://github.com/scipy/scipy/issues/13085>`__: Build failing
on main branch after HiGHS solver merge
* `#13088 <https://github.com/scipy/scipy/issues/13088>`__: BLD, BUG: wheel
builds failure with HiGHS/optimize
* `#13099 <https://github.com/scipy/scipy/issues/13099>`__: Wrong output
format for empty sparse results of kron
* `#13108 <https://github.com/scipy/scipy/issues/13108>`__: TST, CI: GitHub
Actions MacOS Failures
* `#13111 <https://github.com/scipy/scipy/issues/13111>`__: BUG, DOC:
refguide check is failing
* `#13127 <https://github.com/scipy/scipy/issues/13127>`__: ODR output file
writing broken in conda env with system compilers
* `#13134 <https://github.com/scipy/scipy/issues/13134>`__: FromTravis
migration tracker
* `#13140 <https://github.com/scipy/scipy/issues/13140>`__: BUG: signal:
\`ss2tf\` incorrectly truncates output to integers.
* `#13179 <https://github.com/scipy/scipy/issues/13179>`__: CI: lint is
failing because of output to stderr
* `#13182 <https://github.com/scipy/scipy/issues/13182>`__: Key appears
twice in \`test_optimize.test_show_options\`
* `#13191 <https://github.com/scipy/scipy/issues/13191>`__:
\`scipy.linalg.lapack.dgesjv\` overwrites original arrays if...
* `#13207 <https://github.com/scipy/scipy/issues/13207>`__: TST: Erratic
test failure in test_cossin_separate
* `#13221 <https://github.com/scipy/scipy/issues/13221>`__: BUG:
pavement.py glitch
* `#13239 <https://github.com/scipy/scipy/issues/13239>`__: Segmentation
fault with \`eigh(..., driver="evx")\` for 10x10...
* `#13248 <https://github.com/scipy/scipy/issues/13248>`__: ndimage:
improper cval handling for complex-valued inputs
Pull requests for 1.6.0
------------------------------
* `#8032 <https://github.com/scipy/scipy/pull/8032>`__: ENH: Add in taylor
window common in Radar processing
* `#8779 <https://github.com/scipy/scipy/pull/8779>`__: CI: Run benchmarks
* `#9361 <https://github.com/scipy/scipy/pull/9361>`__: ENH: Add Kendall's
tau-a and tau-c variants to scipy.stats.kendalltau()
* `#11068 <https://github.com/scipy/scipy/pull/11068>`__: ENH: Adds
correlation_lags function to scipy.signal
* `#11119 <https://github.com/scipy/scipy/pull/11119>`__: ENH: add
Cramer-von-Mises (one-sample) test to scipy.stats
* `#11249 <https://github.com/scipy/scipy/pull/11249>`__: ENH: optimize:
interpolative decomposition redundancy removal...
* `#11346 <https://github.com/scipy/scipy/pull/11346>`__: ENH: add fast
toeplitz matrix multiplication using FFT
* `#11413 <https://github.com/scipy/scipy/pull/11413>`__: ENH: Multivariate
t-distribution (stale)
* `#11563 <https://github.com/scipy/scipy/pull/11563>`__: ENH: exact
p-value in stats.kendalltau() for sample sizes > 171
* `#11691 <https://github.com/scipy/scipy/pull/11691>`__: ENH: add a stack
of reversal functions to linprog
* `#12043 <https://github.com/scipy/scipy/pull/12043>`__: ENH: optimize:
add HiGHS methods to linprog - continued
* `#12061 <https://github.com/scipy/scipy/pull/12061>`__: Check parameter
consistensy in signal.iirdesign
* `#12067 <https://github.com/scipy/scipy/pull/12067>`__: MAINT: Cleanup
OLDAPI in ndimage/src/_ctest.c
* `#12069 <https://github.com/scipy/scipy/pull/12069>`__: DOC: Add
developer guidelines for implementing the nan_policy...
* `#12077 <https://github.com/scipy/scipy/pull/12077>`__: MAINT: malloc
return value checks for cython
* `#12080 <https://github.com/scipy/scipy/pull/12080>`__: MAINT: Remove
suppress_warnings
* `#12085 <https://github.com/scipy/scipy/pull/12085>`__: ENH: special:
support ILP64 Lapack
* `#12086 <https://github.com/scipy/scipy/pull/12086>`__: MAINT: Cleanup
PyMODINIT_FUNC used during 2to3
* `#12097 <https://github.com/scipy/scipy/pull/12097>`__: ENH: stats:
override stats.rayleigh.fit with analytical MLE
* `#12112 <https://github.com/scipy/scipy/pull/12112>`__: DOC: Improve
integrate.nquad docstring
* `#12125 <https://github.com/scipy/scipy/pull/12125>`__: TST: Add a test
for stats.gmean with negative input
* `#12139 <https://github.com/scipy/scipy/pull/12139>`__: TST: Reduce
flakiness in lsmr test
* `#12142 <https://github.com/scipy/scipy/pull/12142>`__: DOC: add a note
in poisson distribution when mu=0 and k=0 in...
* `#12144 <https://github.com/scipy/scipy/pull/12144>`__: DOC: Update
ndimage.morphology.distance_transform\*
* `#12154 <https://github.com/scipy/scipy/pull/12154>`__: ENH:
scipy.signal: allow lists in gauss_spline
* `#12170 <https://github.com/scipy/scipy/pull/12170>`__: ENH: scipy.stats:
add negative hypergeometric distribution
* `#12177 <https://github.com/scipy/scipy/pull/12177>`__: MAINT: Correctly
add input line to ValueError
* `#12183 <https://github.com/scipy/scipy/pull/12183>`__: ENH: Use fromfile
where possible
* `#12186 <https://github.com/scipy/scipy/pull/12186>`__: MAINT: generalize
tests in SphericalVoronoi
* `#12198 <https://github.com/scipy/scipy/pull/12198>`__: TST: Fix str +
bytes error
* `#12199 <https://github.com/scipy/scipy/pull/12199>`__: ENH: match
np.result_type behaviour in some scipy.signal functions
* `#12200 <https://github.com/scipy/scipy/pull/12200>`__: ENH: add FIR and
IIR gammatone filters to scipy.signal
* `#12204 <https://github.com/scipy/scipy/pull/12204>`__: ENH: Add
overwrite argument for odr.ODR() and its test.
* `#12206 <https://github.com/scipy/scipy/pull/12206>`__: MAINT:lstsq:
Switch to tranposed problem if the array is tall
* `#12208 <https://github.com/scipy/scipy/pull/12208>`__: wavfile bugfixes
and maintenance
* `#12214 <https://github.com/scipy/scipy/pull/12214>`__: DOC: fix
docstring of "sd_beta" of odr.Output.
* `#12234 <https://github.com/scipy/scipy/pull/12234>`__: MAINT: prevent
divide by zero warnings in scipy.optimize BFGS...
* `#12235 <https://github.com/scipy/scipy/pull/12235>`__: REL: set version
to 1.6.0.dev0
* `#12237 <https://github.com/scipy/scipy/pull/12237>`__: BUG: Fix exit
condition for QUICK_SELECT pivot
* `#12242 <https://github.com/scipy/scipy/pull/12242>`__: ENH: Rename
ndimage.sum to ndimage.sum_labels (keep sum as alias)
* `#12243 <https://github.com/scipy/scipy/pull/12243>`__: EHN: Update
SuperLU
* `#12244 <https://github.com/scipy/scipy/pull/12244>`__: MAINT: stats:
avoid spurious warnings in ncx2.pdf
* `#12245 <https://github.com/scipy/scipy/pull/12245>`__: DOC: Fixed
incorrect default for mode in scipy.ndimage.spline_filter1d
* `#12248 <https://github.com/scipy/scipy/pull/12248>`__: MAINT: clean up
pavement.py
* `#12250 <https://github.com/scipy/scipy/pull/12250>`__: ENH: Replaced
csr_matrix() by tocsr() and complemented docstring
* `#12253 <https://github.com/scipy/scipy/pull/12253>`__: TST, CI: turn on
codecov patch diffs
* `#12259 <https://github.com/scipy/scipy/pull/12259>`__: MAINT: Remove
duplicated test for import cycles
* `#12263 <https://github.com/scipy/scipy/pull/12263>`__: ENH: Rename
LocalSearchWrapper bounds
* `#12265 <https://github.com/scipy/scipy/pull/12265>`__: BUG optimize:
Accept np.matrix in lsq_linear
* `#12266 <https://github.com/scipy/scipy/pull/12266>`__: BUG: Fix paren
error in dual annealing accept_reject calculation
* `#12269 <https://github.com/scipy/scipy/pull/12269>`__: MAINT: Included
mismatched shapes in error messages.
* `#12279 <https://github.com/scipy/scipy/pull/12279>`__: MAINT:
\`__array__\` and array protocols cannot be used in sparse.
* `#12281 <https://github.com/scipy/scipy/pull/12281>`__: DOC: update wheel
DL docs
* `#12283 <https://github.com/scipy/scipy/pull/12283>`__: ENH: odr: ILP64
Blas support in ODR
* `#12284 <https://github.com/scipy/scipy/pull/12284>`__: ENH: linalg:
support for ILP64 BLAS/LAPACK in f2py wrappers
* `#12286 <https://github.com/scipy/scipy/pull/12286>`__: ENH: Cythonize
scipy.spatial.transform.Rotation
* `#12287 <https://github.com/scipy/scipy/pull/12287>`__: ENH: Read
arbitrary bit depth (including 24-bit) WAVs
* `#12292 <https://github.com/scipy/scipy/pull/12292>`__: BLD: fix musl
compilation
* `#12293 <https://github.com/scipy/scipy/pull/12293>`__: MAINT: Fix a
DeprecationWarning in validate_runtests_log.py.
* `#12296 <https://github.com/scipy/scipy/pull/12296>`__: DOC: Clarify
area/volume in scipy.spatial.ConvexHull docstrings
* `#12302 <https://github.com/scipy/scipy/pull/12302>`__: CI: Run travis
builds on master to keep cache up to date
* `#12305 <https://github.com/scipy/scipy/pull/12305>`__: TST: Cleanup
print statements in tests
* `#12323 <https://github.com/scipy/scipy/pull/12323>`__: ENH: Add a
Bunch-like class to use as a backwards compatible...
* `#12324 <https://github.com/scipy/scipy/pull/12324>`__: BUG: io: Fix an
error that occurs when attempting to raise a...
* `#12327 <https://github.com/scipy/scipy/pull/12327>`__: DOC: clarify
docstrings of \`query_ball_tree\` and \`query_pairs\`
* `#12334 <https://github.com/scipy/scipy/pull/12334>`__: PERF: Improve
cKDTree.query_ball_point constant time cython overhead
* `#12338 <https://github.com/scipy/scipy/pull/12338>`__: DOC: improve
consistency and clarity of docs in linalg and sparse/linalg
* `#12341 <https://github.com/scipy/scipy/pull/12341>`__: DOC: add Examples
for KDTree query_ball_tree and query_pairs
* `#12343 <https://github.com/scipy/scipy/pull/12343>`__: DOC: add examples
for special.eval_legendre()
* `#12349 <https://github.com/scipy/scipy/pull/12349>`__: BUG: avoid
overflow in sum() for 32-bit systems
* `#12351 <https://github.com/scipy/scipy/pull/12351>`__: DOC: Fix example
wavfile to be 16bit
* `#12352 <https://github.com/scipy/scipy/pull/12352>`__: [BUG] Consider
0/0 division in DOP853 error estimation
* `#12353 <https://github.com/scipy/scipy/pull/12353>`__: Fix exception
causes in vq.py
* `#12354 <https://github.com/scipy/scipy/pull/12354>`__: MAINT: Cleanup
unneeded void\* cast in setlist.pxd
* `#12355 <https://github.com/scipy/scipy/pull/12355>`__: TST: Remove hack
for old win-amd64 bug
* `#12356 <https://github.com/scipy/scipy/pull/12356>`__: ENH: Faster
implementation of scipy.sparse.block_diag (#9411...
* `#12357 <https://github.com/scipy/scipy/pull/12357>`__: MAINT,TST: update
and run scipy/special/utils/convert.py
* `#12358 <https://github.com/scipy/scipy/pull/12358>`__: TST: Check
mstat.skewtest pvalue
* `#12359 <https://github.com/scipy/scipy/pull/12359>`__: TST: Sparse
matrix test with int64 indptr and indices
* `#12363 <https://github.com/scipy/scipy/pull/12363>`__: DOC: ref. in
CloughTocher2DInterpolator
* `#12364 <https://github.com/scipy/scipy/pull/12364>`__: DOC:
\`sparse_distance_matrix\` and \`count_neighbors\` examples
* `#12371 <https://github.com/scipy/scipy/pull/12371>`__: MAINT, CI: bump
to latest stable OpenBLAS
* `#12372 <https://github.com/scipy/scipy/pull/12372>`__: MAINT: Minor
cleanup of (c)KDTree tests
* `#12374 <https://github.com/scipy/scipy/pull/12374>`__: DEP: Deprecate
\`distance.wminkowski\`
* `#12375 <https://github.com/scipy/scipy/pull/12375>`__: ENH: Add fast
path for minkowski distance with p=1,2 and support...
* `#12376 <https://github.com/scipy/scipy/pull/12376>`__: Fix exception
causes in most of the codebase
* `#12377 <https://github.com/scipy/scipy/pull/12377>`__: DOC: Quick fix -
adds newline to correlation_lags docstring Examples...
* `#12381 <https://github.com/scipy/scipy/pull/12381>`__: BENCH: remove
obsolete goal_time param
* `#12382 <https://github.com/scipy/scipy/pull/12382>`__: ENH: Replace
KDTree with a thin wrapper over cKDTree
* `#12385 <https://github.com/scipy/scipy/pull/12385>`__: DOC: improve
docstrings of interpolate.NearestNDInterpolator.__call__...
* `#12387 <https://github.com/scipy/scipy/pull/12387>`__: DOC/STY: add
example to scipy.signal.correlate
* `#12393 <https://github.com/scipy/scipy/pull/12393>`__: CI: Replace the
existing check for non-ASCII characters with...
* `#12394 <https://github.com/scipy/scipy/pull/12394>`__: CI: arm64 numpy
now available
* `#12395 <https://github.com/scipy/scipy/pull/12395>`__: ENH: improve
stats.binned_statistic_dd performance
* `#12396 <https://github.com/scipy/scipy/pull/12396>`__: DOC, MAINT:
forward port 1.5.0 relnotes
* `#12398 <https://github.com/scipy/scipy/pull/12398>`__: API: Disable
len() and indexing of Rotation instances with single...
* `#12399 <https://github.com/scipy/scipy/pull/12399>`__: MAINT: Replace
some Unicode dash-like chars with an ASCII hyphen.
* `#12402 <https://github.com/scipy/scipy/pull/12402>`__: update .mailmap
* `#12404 <https://github.com/scipy/scipy/pull/12404>`__: MAINT: io: Change
the encoding comment of test_mio.py to utf-8.
* `#12416 <https://github.com/scipy/scipy/pull/12416>`__: CI: cache mingw,
azure pipelines
* `#12427 <https://github.com/scipy/scipy/pull/12427>`__: BUG: logic error
in loop unrolling (cKDTree)
* `#12432 <https://github.com/scipy/scipy/pull/12432>`__: DOC: Remove the
"Basic functions" section from the SciPy tutorial.
* `#12434 <https://github.com/scipy/scipy/pull/12434>`__: ENH:linalg: Add
LAPACK wrappers pptrf/pptrs/ppsv/pptri/ppcon
* `#12435 <https://github.com/scipy/scipy/pull/12435>`__: DOC: fix simplex
math for scipy.stats.dirichlet documentation
* `#12439 <https://github.com/scipy/scipy/pull/12439>`__: DOC: add API
methods summary for NdPPoly
* `#12443 <https://github.com/scipy/scipy/pull/12443>`__: BUG: stats:
Improve calculation of exponnorm.pdf
* `#12448 <https://github.com/scipy/scipy/pull/12448>`__: DOC: stats: Add
"Examples" to the ansari docstring.
* `#12450 <https://github.com/scipy/scipy/pull/12450>`__: ENH: add
\`leaves_color_list\` for cluster.dendrogram dictionary.
* `#12451 <https://github.com/scipy/scipy/pull/12451>`__: MAINT: remove
"blacklist" terminology from code base
* `#12452 <https://github.com/scipy/scipy/pull/12452>`__: DOC: clarify the
meaning of whitening for cluster.vq.whiten()
* `#12455 <https://github.com/scipy/scipy/pull/12455>`__: MAINT: clearer
error message in setup.py
* `#12457 <https://github.com/scipy/scipy/pull/12457>`__: ENH: stats:
override stats.pareto.fit with analytical MLE
* `#12460 <https://github.com/scipy/scipy/pull/12460>`__: check if column
in spearman rho is entirely NaN or Inf
* `#12463 <https://github.com/scipy/scipy/pull/12463>`__: DOC: improve and
clean up \*Spline docstrings in fitpack2.py
* `#12474 <https://github.com/scipy/scipy/pull/12474>`__: ENH: linalg:
speedup _sqrtm_triu by moving tight loop to Cython
* `#12476 <https://github.com/scipy/scipy/pull/12476>`__: ENH: add IIR comb
filter to scipy.signal
* `#12484 <https://github.com/scipy/scipy/pull/12484>`__: Fix documentation
for minimize
* `#12486 <https://github.com/scipy/scipy/pull/12486>`__: DOC: add a note
in poisson distribution when mu=0 and k=0 in...
* `#12491 <https://github.com/scipy/scipy/pull/12491>`__: MAINT: forward
port 1.5.1 release notes
* `#12508 <https://github.com/scipy/scipy/pull/12508>`__: Fix exception
causes all over the codebase
* `#12514 <https://github.com/scipy/scipy/pull/12514>`__: ENH: stats:
override stats.invgauss.fit with analytical MLE
* `#12519 <https://github.com/scipy/scipy/pull/12519>`__: PERF: Avoid
np.zeros when custom initialization is needed anyway
* `#12520 <https://github.com/scipy/scipy/pull/12520>`__: DOC: Minor RST
section renaming.
* `#12521 <https://github.com/scipy/scipy/pull/12521>`__: MAINT: Remove
unused imports
* `#12522 <https://github.com/scipy/scipy/pull/12522>`__: PERF: Get rid of
unnececssary allocation in VarReader5.cread_fieldnames
* `#12524 <https://github.com/scipy/scipy/pull/12524>`__: DOC: special: Set
Axes3D rect to avoid clipping labels in plot.
* `#12525 <https://github.com/scipy/scipy/pull/12525>`__: Fix large sparse
nnz
* `#12526 <https://github.com/scipy/scipy/pull/12526>`__: DOC: Remove
double section and too long header underline.
* `#12527 <https://github.com/scipy/scipy/pull/12527>`__: Improve error
message for wrong interpolation type
* `#12530 <https://github.com/scipy/scipy/pull/12530>`__: Move redundant
logic outside loop for conditional speedup in...
* `#12532 <https://github.com/scipy/scipy/pull/12532>`__: ENH: Add
norm={"forward", "backward"} to \`scipy.fft\`
* `#12535 <https://github.com/scipy/scipy/pull/12535>`__: MAINT: Avoid
sphinx deprecated aliases for SeeAlso and Only
* `#12540 <https://github.com/scipy/scipy/pull/12540>`__: BUG: fix
odr.output.work_ind key bug and add its test.
* `#12541 <https://github.com/scipy/scipy/pull/12541>`__: ENH: add solver
for minimum weight full bipartite matching
* `#12550 <https://github.com/scipy/scipy/pull/12550>`__: PERF: pickling
speed of rv\*
* `#12551 <https://github.com/scipy/scipy/pull/12551>`__: DOC: fix typo in
cluster/_hierarchy.pyx
* `#12552 <https://github.com/scipy/scipy/pull/12552>`__: CI: Cleanup
travis pip installs
* `#12556 <https://github.com/scipy/scipy/pull/12556>`__: BUG: Fix problem
with Scipy.integrate.solve_bvp for big problems
* `#12557 <https://github.com/scipy/scipy/pull/12557>`__: MAINT: Use extern
templates to improve sparsetools compile time
* `#12558 <https://github.com/scipy/scipy/pull/12558>`__: MAINT: Remove
hack to allow scipy.fft to act like a function
* `#12563 <https://github.com/scipy/scipy/pull/12563>`__: MAINT: Remove
unused mu0 in special/orthogonal.py
* `#12564 <https://github.com/scipy/scipy/pull/12564>`__: DOC: fix return
type docstring for least_squares
* `#12565 <https://github.com/scipy/scipy/pull/12565>`__: DOC: stats:
respond to query about Kruskal-Wallis test being...
* `#12566 <https://github.com/scipy/scipy/pull/12566>`__: BUG: Interpolate:
use stable sort
* `#12568 <https://github.com/scipy/scipy/pull/12568>`__: Updated
documentation for as_quat
* `#12571 <https://github.com/scipy/scipy/pull/12571>`__: DEP: remove
deprecated slepian window
* `#12573 <https://github.com/scipy/scipy/pull/12573>`__: DEP: remove
\`frechet_l\` and \`frechet_r\`
* `#12575 <https://github.com/scipy/scipy/pull/12575>`__: BUG: stats: fix
multinomial.pmf NaNs when params sum > 1
* `#12576 <https://github.com/scipy/scipy/pull/12576>`__: MAINT: remove
warning from LSQSphereBivariateSpline
* `#12582 <https://github.com/scipy/scipy/pull/12582>`__: ENH: Multivariate
t-distribution
* `#12587 <https://github.com/scipy/scipy/pull/12587>`__: ENH: speed up rvs
of gengamma in scipy.stats
* `#12588 <https://github.com/scipy/scipy/pull/12588>`__: DOC: add Examples
add see also sections for LinearNDInterpolator,...
* `#12597 <https://github.com/scipy/scipy/pull/12597>`__: ENH: Add
single-sided p-values to t-tests
* `#12599 <https://github.com/scipy/scipy/pull/12599>`__: Small update to
scipy FFT tutorial
* `#12600 <https://github.com/scipy/scipy/pull/12600>`__: ENH: disjoint set
data structure
* `#12602 <https://github.com/scipy/scipy/pull/12602>`__: BUG: add const
for Read-only views in interpnd.pyx
* `#12605 <https://github.com/scipy/scipy/pull/12605>`__: BUG: correct
\`np.asanyarray\` use in \`scipy.constants.lambda2nu\`
* `#12610 <https://github.com/scipy/scipy/pull/12610>`__: MAINT: forward
port 1.5.2 release notes
* `#12612 <https://github.com/scipy/scipy/pull/12612>`__: MAINT: stats: Use
explicit keyword parameters instead of \`\*\*kwds\`.
* `#12616 <https://github.com/scipy/scipy/pull/12616>`__: DOC: make
explicit docstring that interpolate.interp1d only accepts...
* `#12618 <https://github.com/scipy/scipy/pull/12618>`__: DOC: Minor doc
formatting.
* `#12640 <https://github.com/scipy/scipy/pull/12640>`__: MAINT: stats: fix
issues with scipy.stats.pearson3 docs, moment,...
* `#12647 <https://github.com/scipy/scipy/pull/12647>`__: TST: Add Boost
ellipr[cdfgj]_data test data
* `#12648 <https://github.com/scipy/scipy/pull/12648>`__: DOC: Update
special/utils/README with instructions
* `#12649 <https://github.com/scipy/scipy/pull/12649>`__: DOC: simplified
pip quickstart guide
* `#12650 <https://github.com/scipy/scipy/pull/12650>`__: DOC: stats: Fix
boxcox docstring: lambda can be negative.
* `#12655 <https://github.com/scipy/scipy/pull/12655>`__: DOC: update
Steering Council members listed in governance docs
* `#12659 <https://github.com/scipy/scipy/pull/12659>`__: rv_sample expect
bug
* `#12663 <https://github.com/scipy/scipy/pull/12663>`__: DOC: optimize:
try to fix linprog method-specific documentation
* `#12664 <https://github.com/scipy/scipy/pull/12664>`__: BUG: stats: Fix
logpdf with large negative values for logistic...
* `#12666 <https://github.com/scipy/scipy/pull/12666>`__: MAINT: Fixes from
static analysis
* `#12667 <https://github.com/scipy/scipy/pull/12667>`__: ENH: Adding
Modified Rodrigues Parameters to the Rotation class
* `#12670 <https://github.com/scipy/scipy/pull/12670>`__: DOC: Update
documentation for Gamma distribution
* `#12673 <https://github.com/scipy/scipy/pull/12673>`__: API:
Unconditionally return np.intp from cKDTree.query
* `#12677 <https://github.com/scipy/scipy/pull/12677>`__: MAINT: Add
Autogenerated notice to ufuncs.pyi
* `#12682 <https://github.com/scipy/scipy/pull/12682>`__: MAINT: Remove
_util._valarray
* `#12688 <https://github.com/scipy/scipy/pull/12688>`__: MAINT: add
f2py-generated scipy.integrate files to .gitignore
* `#12689 <https://github.com/scipy/scipy/pull/12689>`__: BENCH: simplify
benchmark setup, remove benchmarks/run.py
* `#12694 <https://github.com/scipy/scipy/pull/12694>`__: scipy/stats: Add
laplace_asymmetric continuous distribution
* `#12695 <https://github.com/scipy/scipy/pull/12695>`__: DOC: update
Ubuntu quickstart; conda compilers now work!
* `#12698 <https://github.com/scipy/scipy/pull/12698>`__: MAINT: Replace
np.max with np.maximum
* `#12700 <https://github.com/scipy/scipy/pull/12700>`__: TST: bump test
precision for constrained trustregion test
* `#12702 <https://github.com/scipy/scipy/pull/12702>`__: TST: bump test
tolerance for \`DifferentialEvolutionSolver.test_L4\`
* `#12703 <https://github.com/scipy/scipy/pull/12703>`__: BUG: Improve
input validation for sepfir2d
* `#12708 <https://github.com/scipy/scipy/pull/12708>`__: MAINT: fix a typo
in scipy.sparse
* `#12709 <https://github.com/scipy/scipy/pull/12709>`__: BUG: bvls can
fail catastrophically to converge
* `#12711 <https://github.com/scipy/scipy/pull/12711>`__: MAINT: Use
platform.python_implementation to determine IS_PYPY
* `#12713 <https://github.com/scipy/scipy/pull/12713>`__: TST: Fix flaky
test_lgmres
* `#12716 <https://github.com/scipy/scipy/pull/12716>`__: DOC: add examples
and tutorial links for interpolate functions...
* `#12717 <https://github.com/scipy/scipy/pull/12717>`__: DOC: Fix Issue
#5396
* `#12725 <https://github.com/scipy/scipy/pull/12725>`__: ENH: Support
complex-valued images and kernels for many ndimage...
* `#12729 <https://github.com/scipy/scipy/pull/12729>`__: DEP: remove
setup_requires
* `#12732 <https://github.com/scipy/scipy/pull/12732>`__: BENCH: skip
benchmarks instead of hiding them when SCIPY_XSLOW=0
* `#12734 <https://github.com/scipy/scipy/pull/12734>`__: CI: Don't ignore
line-length in the lint_diff check.
* `#12736 <https://github.com/scipy/scipy/pull/12736>`__: DOC: Fix
signal.windows.get_window() 'exponential' docstring
* `#12737 <https://github.com/scipy/scipy/pull/12737>`__: ENH: stats:
override stats.gumbel_r.fit and stats.gumbel_l.fit...
* `#12738 <https://github.com/scipy/scipy/pull/12738>`__: ENH: stats:
override stats.logistic.fit with system of equations...
* `#12743 <https://github.com/scipy/scipy/pull/12743>`__: BUG: Avoid
negative variances in circular statistics
* `#12744 <https://github.com/scipy/scipy/pull/12744>`__: Prevent build
error on GNU/Hurd
* `#12746 <https://github.com/scipy/scipy/pull/12746>`__: TST: parameterize
the test cases in test_ndimage.py
* `#12752 <https://github.com/scipy/scipy/pull/12752>`__: DOC: Add examples
for some root finding functions.
* `#12754 <https://github.com/scipy/scipy/pull/12754>`__: MAINT, CI: Azure
windows deps multiline
* `#12756 <https://github.com/scipy/scipy/pull/12756>`__: ENH: stats: Add
an sf method to levy for improved precision in...
* `#12757 <https://github.com/scipy/scipy/pull/12757>`__: ENH: stats: Add
an sf method to levy_l for improved precision.
* `#12765 <https://github.com/scipy/scipy/pull/12765>`__: TST, MAINT:
infeasible_2 context
* `#12767 <https://github.com/scipy/scipy/pull/12767>`__: Fix spline
interpolation boundary handling for modes reflect...
* `#12769 <https://github.com/scipy/scipy/pull/12769>`__: DOC: syntax error
in scipy.interpolate.bspl
* `#12770 <https://github.com/scipy/scipy/pull/12770>`__: ENH: add
nearest-up rounding to scipy.interpolate.interp1d
* `#12771 <https://github.com/scipy/scipy/pull/12771>`__: TST: fix invalid
input unit test for scipy.signal.gammatone
* `#12775 <https://github.com/scipy/scipy/pull/12775>`__: ENH: Adds
quadratic_assignment with two methods
* `#12776 <https://github.com/scipy/scipy/pull/12776>`__: ENH: add
grid-constant boundary handling in ndimage interpolation...
* `#12777 <https://github.com/scipy/scipy/pull/12777>`__: Add Taylor Window
function - Common in Radar DSP
* `#12779 <https://github.com/scipy/scipy/pull/12779>`__: ENH: Improvements
to pocketfft thread pool and ARM neon vectorization
* `#12788 <https://github.com/scipy/scipy/pull/12788>`__: API: Rename
cKDTree n_jobs argument to workers
* `#12792 <https://github.com/scipy/scipy/pull/12792>`__: DOC: remove
THANKS.txt file in favor of scipy.org
* `#12793 <https://github.com/scipy/scipy/pull/12793>`__: Add new flag to
authors tool
* `#12802 <https://github.com/scipy/scipy/pull/12802>`__: BENCH: add
scipy.ndimage.interpolation benchmarks
* `#12803 <https://github.com/scipy/scipy/pull/12803>`__: Do not pin the
version of numpy in unsupported python versions
* `#12810 <https://github.com/scipy/scipy/pull/12810>`__: CI: fix 32-bit
Linux build failure on Azure CI runs
* `#12812 <https://github.com/scipy/scipy/pull/12812>`__: ENH: support
interpolation of complex-valued images
* `#12814 <https://github.com/scipy/scipy/pull/12814>`__: BUG: nonlin_solve
shouldn't pass non-vector dx to tol_norm
* `#12818 <https://github.com/scipy/scipy/pull/12818>`__: Update ckdtree.pyx
* `#12822 <https://github.com/scipy/scipy/pull/12822>`__: MAINT: simplify
directed_hausdorff
* `#12827 <https://github.com/scipy/scipy/pull/12827>`__: DOC: Fix wrong
name w being used instead of worN in docs.
* `#12831 <https://github.com/scipy/scipy/pull/12831>`__: DOC: fix typo in
sparse/base.py
* `#12835 <https://github.com/scipy/scipy/pull/12835>`__: MAINT: stats:
Improve vonmises PDF calculation.
* `#12839 <https://github.com/scipy/scipy/pull/12839>`__: ENH: scipy.stats:
add multivariate hypergeometric distribution
* `#12843 <https://github.com/scipy/scipy/pull/12843>`__: changed M to N in
windows.dpss
* `#12846 <https://github.com/scipy/scipy/pull/12846>`__: MAINT: update
minimum NumPy version to 1.16.5
* `#12847 <https://github.com/scipy/scipy/pull/12847>`__: DOC: Unify the
formula in docs of scipy.stats.pearsonr()
* `#12849 <https://github.com/scipy/scipy/pull/12849>`__: DOC: polish QAP
docs for consistency and readability
* `#12852 <https://github.com/scipy/scipy/pull/12852>`__: ENH, MAINT: Bring
KDTree interface to feature-parity with cKDTree
* `#12858 <https://github.com/scipy/scipy/pull/12858>`__: DOC: use :doi:
and :arxiv: directives for references
* `#12872 <https://github.com/scipy/scipy/pull/12872>`__: lazily import
multiprocessing.Pool in MapWrapper
* `#12878 <https://github.com/scipy/scipy/pull/12878>`__: DOC: document
ScalarFunction
* `#12882 <https://github.com/scipy/scipy/pull/12882>`__: MAINT: stats:
Change a test to use <= instead of strictly less...
* `#12885 <https://github.com/scipy/scipy/pull/12885>`__: numpy.linspace
calls edited to ensure correct spacing.
* `#12886 <https://github.com/scipy/scipy/pull/12886>`__: DOC: stats: Add
'versionadded' to cramervonmises docstring.
* `#12899 <https://github.com/scipy/scipy/pull/12899>`__: TST: make a
couple of tests expected to fail on 32-bit architectures
* `#12903 <https://github.com/scipy/scipy/pull/12903>`__: DOC: update
Windows build guide and move into contributor guide
* `#12907 <https://github.com/scipy/scipy/pull/12907>`__: DOC: clarify
which array the precenter option applies to
* `#12908 <https://github.com/scipy/scipy/pull/12908>`__: MAINT: spatial:
Remove two occurrences of unused variables in...
* `#12909 <https://github.com/scipy/scipy/pull/12909>`__: ENH: stats: Add
methods gumbel_r._sf and gumbel_r._isf
* `#12910 <https://github.com/scipy/scipy/pull/12910>`__: CI: travis:
Remove some unnecessary code from .travis.yml.
* `#12911 <https://github.com/scipy/scipy/pull/12911>`__: Minor fixes to
dendrogram plotting
* `#12921 <https://github.com/scipy/scipy/pull/12921>`__: CI: don't run
GitHub Actions on fork or in cron job
* `#12927 <https://github.com/scipy/scipy/pull/12927>`__: MAINT: rename
integrate.simps to simpson
* `#12934 <https://github.com/scipy/scipy/pull/12934>`__: MAINT: rename
trapz and cumtrapz to (cumulative\_)trapezoid
* `#12936 <https://github.com/scipy/scipy/pull/12936>`__: MAINT: fix
numerical precision in nct.stats
* `#12938 <https://github.com/scipy/scipy/pull/12938>`__: MAINT: fix linter
on master
* `#12941 <https://github.com/scipy/scipy/pull/12941>`__: Update minimum
AIX pinnings to match non AIX builds
* `#12955 <https://github.com/scipy/scipy/pull/12955>`__: BUG: Fixed wrong
NaNs check in scipy.stats.weightedtau
* `#12958 <https://github.com/scipy/scipy/pull/12958>`__: ENH: stats:
Implement _logpdf, _sf and _isf for nakagami.
* `#12962 <https://github.com/scipy/scipy/pull/12962>`__: Correcting that p
should be in [0,1] for a variety of discrete...
* `#12964 <https://github.com/scipy/scipy/pull/12964>`__: BUG: added
line.strip() to split_data_line()
* `#12968 <https://github.com/scipy/scipy/pull/12968>`__: ENH: stats: Use
only an analytical formula or scalar root-finding...
* `#12971 <https://github.com/scipy/scipy/pull/12971>`__: MAINT: Declare
support for Python 3.9
* `#12972 <https://github.com/scipy/scipy/pull/12972>`__: MAINT: Remove
redundant Python < 3.6 code
* `#12980 <https://github.com/scipy/scipy/pull/12980>`__: DOC: Update
documentation on optimize.rosen
* `#12983 <https://github.com/scipy/scipy/pull/12983>`__: ENH: improvements
to stats.linregress
* `#12990 <https://github.com/scipy/scipy/pull/12990>`__: DOC: Clarify that
using sos as output type for iirdesign can...
* `#12992 <https://github.com/scipy/scipy/pull/12992>`__: DOC:
capitalization and formatting in lsmr
* `#12995 <https://github.com/scipy/scipy/pull/12995>`__: DOC: stats:
Several documentation fixes.
* `#12996 <https://github.com/scipy/scipy/pull/12996>`__: BUG: Improve
error messages for \`range\` arg of binned_statistic_dd
* `#12998 <https://github.com/scipy/scipy/pull/12998>`__: MAINT:
approx_derivative with FP32 closes #12991
* `#13004 <https://github.com/scipy/scipy/pull/13004>`__: TST:
isinstance(OptimizeResult.message, str) closes #13001
* `#13006 <https://github.com/scipy/scipy/pull/13006>`__: Keep correct
dtype when loading empty mat arrays.
* `#13009 <https://github.com/scipy/scipy/pull/13009>`__: MAINT: clip SLSQP
step within bounds
* `#13012 <https://github.com/scipy/scipy/pull/13012>`__: DOC: fix
bilinear_zpk example labels
* `#13013 <https://github.com/scipy/scipy/pull/13013>`__: ENH: Add
\`subset\` and \`subsets\` methods to \`DisjointSet\`...
* `#13029 <https://github.com/scipy/scipy/pull/13029>`__: MAINT:
basinhopping callback for initial mininmisation
* `#13032 <https://github.com/scipy/scipy/pull/13032>`__: DOC: fix
docstring errors in in stats.wilcoxon
* `#13036 <https://github.com/scipy/scipy/pull/13036>`__: BUG: forward port
lint_diff shims
* `#13041 <https://github.com/scipy/scipy/pull/13041>`__: MAINT: dogbox
ensure x is within bounds closes #11403
* `#13042 <https://github.com/scipy/scipy/pull/13042>`__: MAINT: forward
port 1.5.4 release notes
* `#13046 <https://github.com/scipy/scipy/pull/13046>`__: DOC: Update
optimize.least_squares doc for all tolerance must...
* `#13052 <https://github.com/scipy/scipy/pull/13052>`__: Typo fix for
cluster documentation
* `#13054 <https://github.com/scipy/scipy/pull/13054>`__: BUG: fix
\`scipy.optimize.show_options\` for unknown methods....
* `#13056 <https://github.com/scipy/scipy/pull/13056>`__: MAINT: fft: Fix a
C++ compiler warning.
* `#13057 <https://github.com/scipy/scipy/pull/13057>`__: Minor fixes on
doc of function csr_tocsc
* `#13058 <https://github.com/scipy/scipy/pull/13058>`__: DOC: stats:
Replace np.float with np.float64 in a tutorial file.
* `#13059 <https://github.com/scipy/scipy/pull/13059>`__: DOC: stats:
Update the "Returns" section of the linregress docstring.
* `#13060 <https://github.com/scipy/scipy/pull/13060>`__: MAINT:
clip_x_for_func should be private
* `#13061 <https://github.com/scipy/scipy/pull/13061>`__: DOC: signal.win
-> signal.windows.win in Examples
* `#13063 <https://github.com/scipy/scipy/pull/13063>`__: MAINT: Add
suite-sparse and sksparse installation check
* `#13070 <https://github.com/scipy/scipy/pull/13070>`__: MAINT: stats:
Remove a couple obsolete comments.
* `#13073 <https://github.com/scipy/scipy/pull/13073>`__: BUG: Fix
scalar_search_wolfe2 to resolve #12157
* `#13078 <https://github.com/scipy/scipy/pull/13078>`__: CI, MAINT:
migrate Lint to Azure
* `#13081 <https://github.com/scipy/scipy/pull/13081>`__: BLD: drop Python
3.6 support (NEP 29)
* `#13082 <https://github.com/scipy/scipy/pull/13082>`__: MAINT: update
minimum NumPy version to 1.16.5 in a couple more...
* `#13083 <https://github.com/scipy/scipy/pull/13083>`__: DOC: update
toolchain.rst
* `#13086 <https://github.com/scipy/scipy/pull/13086>`__: DOC: Update the
Parameters section of the correlation docstring
* `#13087 <https://github.com/scipy/scipy/pull/13087>`__: ENH:signal:
Speed-up Cython implementation of _sosfilt
* `#13089 <https://github.com/scipy/scipy/pull/13089>`__: BLD, BUG: add c99
compiler flag to HiGHS basiclu library
* `#13091 <https://github.com/scipy/scipy/pull/13091>`__: BUG: Fix GIL
handling in _sosfilt
* `#13094 <https://github.com/scipy/scipy/pull/13094>`__: DOC: clarify
"location" in docstring of cKDTree.query
* `#13095 <https://github.com/scipy/scipy/pull/13095>`__: Zoom resize update
* `#13097 <https://github.com/scipy/scipy/pull/13097>`__: BUG: fix
CubicSpline(..., bc_type="periodic") #11758
* `#13100 <https://github.com/scipy/scipy/pull/13100>`__: BUG: sparse:
Correct output format of kron
* `#13107 <https://github.com/scipy/scipy/pull/13107>`__: ENH: faster
linear_sum_assignment for small cost matrices
* `#13110 <https://github.com/scipy/scipy/pull/13110>`__: CI, MAINT:
refguide/asv checks to azure
* `#13112 <https://github.com/scipy/scipy/pull/13112>`__: CI: fix MacOS CI
* `#13113 <https://github.com/scipy/scipy/pull/13113>`__: CI: Install word
list package for refguide-check
* `#13115 <https://github.com/scipy/scipy/pull/13115>`__: BUG: add value
range check for signal.iirdesign()
* `#13116 <https://github.com/scipy/scipy/pull/13116>`__: CI: Don't report
name errors after an exception in refguide-check
* `#13117 <https://github.com/scipy/scipy/pull/13117>`__: CI: move
sdist/pre-release test Azure
* `#13119 <https://github.com/scipy/scipy/pull/13119>`__: Improve error
message on friedmanchisquare function
* `#13121 <https://github.com/scipy/scipy/pull/13121>`__: Fix factorial()
for NaN on Python 3.10
* `#13123 <https://github.com/scipy/scipy/pull/13123>`__: BLD: Specify file
extension for language standard version tests
* `#13128 <https://github.com/scipy/scipy/pull/13128>`__: TST: skip Fortran
I/O test for ODR
* `#13130 <https://github.com/scipy/scipy/pull/13130>`__: TST: skip
factorial() float tests on Python 3.10
* `#13136 <https://github.com/scipy/scipy/pull/13136>`__: CI:Add python dbg
run to GH Actions
* `#13138 <https://github.com/scipy/scipy/pull/13138>`__: CI: Port
coverage, 64-bit BLAS, GCC 4.8 build to azure
* `#13139 <https://github.com/scipy/scipy/pull/13139>`__: Fix edge case for
mode='nearest' in ndimage.interpolation functions
* `#13141 <https://github.com/scipy/scipy/pull/13141>`__: BUG: signal: Fix
data type of the numerator returned by ss2tf.
* `#13144 <https://github.com/scipy/scipy/pull/13144>`__: MAINT: stats:
restrict gausshyper z > -1
* `#13146 <https://github.com/scipy/scipy/pull/13146>`__: typo in csr.py
* `#13148 <https://github.com/scipy/scipy/pull/13148>`__: BUG: stats: fix
typo in stable rvs per gh-12870
* `#13149 <https://github.com/scipy/scipy/pull/13149>`__: DOC:
spatial/stats: cross-ref random rotation matrix functions
* `#13151 <https://github.com/scipy/scipy/pull/13151>`__: MAINT: stats: Fix
a test and a couple PEP-8 issues.
* `#13152 <https://github.com/scipy/scipy/pull/13152>`__: MAINT: stats: Use
np.take_along_axis in the private function...
* `#13154 <https://github.com/scipy/scipy/pull/13154>`__: ENH: stats:
Implement defined handling of constant inputs in...
* `#13156 <https://github.com/scipy/scipy/pull/13156>`__: DOC: maintain
equal display range for ndimage.zoom example
* `#13159 <https://github.com/scipy/scipy/pull/13159>`__: CI: Azure: Don't
run tests on merge commits, except for coverage
* `#13160 <https://github.com/scipy/scipy/pull/13160>`__: DOC: stats:
disambiguate location-shifted/noncentral
* `#13161 <https://github.com/scipy/scipy/pull/13161>`__: BUG:
DifferentialEvolutionSolver.__del__ can fail in garbage...
* `#13163 <https://github.com/scipy/scipy/pull/13163>`__: BUG: stats: fix
bug in spearmanr nan propagation
* `#13167 <https://github.com/scipy/scipy/pull/13167>`__: MAINT: stats: Fix
a test.
* `#13169 <https://github.com/scipy/scipy/pull/13169>`__: BUG: stats: Fix
handling of misaligned masks in mstats.pearsonr.
* `#13178 <https://github.com/scipy/scipy/pull/13178>`__: CI: testing.yml
--> macos.yml
* `#13181 <https://github.com/scipy/scipy/pull/13181>`__: CI: fix lint
* `#13190 <https://github.com/scipy/scipy/pull/13190>`__: BUG: optimize:
fix a duplicate key bug for \`test_show_options\`
* `#13192 <https://github.com/scipy/scipy/pull/13192>`__: BUG:linalg: Add
overwrite option to gejsv wrapper
* `#13194 <https://github.com/scipy/scipy/pull/13194>`__: BUG: slsqp should
be able to use rel_step
* `#13199 <https://github.com/scipy/scipy/pull/13199>`__: [skip travis]
DOC: 1.6.0 release notes
* `#13203 <https://github.com/scipy/scipy/pull/13203>`__: fix typos
* `#13209 <https://github.com/scipy/scipy/pull/13209>`__: TST:linalg: set
the seed for cossin test
* `#13212 <https://github.com/scipy/scipy/pull/13212>`__: [DOC] Backtick
and directive consistency.
* `#13217 <https://github.com/scipy/scipy/pull/13217>`__: REL: add
necessary setuptools and numpy version pins in pyproject.toml...
* `#13226 <https://github.com/scipy/scipy/pull/13226>`__: BUG: pavement.py
file handle fixes
* `#13249 <https://github.com/scipy/scipy/pull/13249>`__: Handle cval
correctly for ndimage functions with complex-valued...
* `#13253 <https://github.com/scipy/scipy/pull/13253>`__: BUG,MAINT: Ensure
all Pool objects are closed
* `#13255 <https://github.com/scipy/scipy/pull/13255>`__: BUG:linalg: Fix
heevx wrappers and add new tests
* `#13260 <https://github.com/scipy/scipy/pull/13260>`__: CI: fix macOS
testing
* `#13269 <https://github.com/scipy/scipy/pull/13269>`__: CI: github
actions: In the linux dbg tests, update apt before...
* `#13279 <https://github.com/scipy/scipy/pull/13279>`__: MAINT: 1.6.0 rc2
backports
Checksums
=========
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